Stopping and Saving¶
If you know you’re not going to be actively working on your project, it’s good manners to save your work and stop the session, so that you can release the resources you were consuming. You can do this from the Sessions tab on the RenkuLab UI.
Sometimes an environment will get stuck pending launch (e.g. because you requested GPUs and they are not yet available). In this case you can view the status and logs to see if there’s a useful message. In the case of pending GPUs, you can safely wait for the resources to become available. However in other cases, more commonly when you are trying to customize your environment, you might notice an issue via the logs, and want to stop the launch so that you can fix the problem and try again. However, for these stuck notebooks it is not yet possible. You can reach out to us on discourse in this case.
Saving your work¶
Sessions are kept running as long as they in use. In the default RenkuLab configuration, idle sessions are stopped after 24 hours of inactivity. Furthermore, sessions can crash, for example if you run a process that eats more memory than you’ve allocated. Thus, it’s best to save often.
There are two ways to save your work back to RenkuLab from a session
(both available in JupyterLab and RStudio), and behind the scenes both are using
push. You can type these commands directly
into the available terminal interface of your session, or click
some buttons via the git plugins.
When you push your changes back to RenkuLab, the GitLab CI/CD is triggered to build
a new image out of the
Dockerfile, which will be available the next time you
start a new environment.
Saving via Terminal¶
In the Terminal interface inside the session, it is easiest to
use a simple
renku save command to commit and push (i.e. save) any of the changes made
in your project. For example, after updating the
renku save Successfully saved to remote branch master: README.md OK
You can also add a custom message with the
renku save will add commit and push any new or modified files
If you would like to it manually to have finer control, you need these three steps:
git add *
git commit -m "my short but descriptive message of the changes I made"
If you are new to git, these resources might be useful:
Saving via Git Plugin¶
Find the git plugin interface (Jupyterlab: branched-dots icon on lefthand vertical menu; RStudio: top right box). Add the changed files you want to save to staging, write a message to commit the changes, and don’t forget to hit the icon or button to push those changes.
Autosave in sessions¶
When you stop a session, an automatic check looks for any work that has not been pushed to the remote repository, including untracked and modified files. If something is found, a new “autosave” branch is created and pushed to GitLab.
You cannot start a notebook server from these branches but you can still see them listed in GitLab. You can easily identify them because their name starts with renku/autosave/
Restore unsaved work¶
The next time you start a new session from the same branch/commit combination, you will be notified and the autosaved data will be automatically loaded in your session. Please note that nothing will be pushed automatically to the master branch, therefore you won’t see any changes in your project’s files in Renku, nor will the provenance be updated.
Local branches you created but never pushed to the origin will not be saved.
Discard autosaved content¶
If you don’t need the autosaved content, you can easily discard it using the following commands:
$ git reset --hard origin/<branch-name> # remove commits and modified files $ git clean -f -d # remove untracked files
If you are working on the
master branch, the command looks like this:
$ git reset --hard origin/master && git clean -f -d
Push changes regularly¶
The autosave feature is intended to prevent loss of work, but it is not a
replacement for git. By using
renku save or making commits in git, you
track your changes and ensure that they are visible to others. And although we
are always working to improve robustness, in some situations, autosave can fail.
So the most secure way to keep your work is to commit and push to origin.